Another data point:
At a meetup on Sunday, I noticed that my passenger side window was down about 1cm from the seal (about as far down as you can go without opening up to the cabin). It was about 45 degrees outside at the time, and none of my other windows were lower like this. Closing the window with the switch worked just fine.
I can't say for sure that I didn't inadvertently tap the window switch at any prior point, but I'm usually pretty sensitive to sound, so you'd think I would have noticed had I done that. It's just odd, especially given that I rarely ever have anyone riding in the front passenger seat.
As someone with no garage, I'll keep a close on this window and see if it happens again, because obviously I don't want rain, snow, and ice slipping into the cabin. I could try recalibrating the window position too... though something tells me that if this is a legit issue, it's due to a bug in the firmware.
EDIT: Right on cue, just got 46.2.